Transcript: Mouse XM_006534768.1

PREDICTED: Mus musculus SPARC-like 1 (Sparcl1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Sparcl1 (13602)
Length:
3290
CDS:
897..2849

Additional Resources:

NCBI RefSeq record:
XM_006534768.1
NBCI Gene record:
Sparcl1 (13602)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006534768.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000429882 CTCTGTGCATCTGCGTTTATA pLKO_005 3120 3UTR 100% 15.000 21.000 N Sparcl1 n/a
2 TRCN0000423421 GGCCACTGCTTTGGAATTAAA pLKO_005 2796 CDS 100% 15.000 12.000 N Sparcl1 n/a
3 TRCN0000080179 CCTCTCCTATTACCTCAAATA pLKO.1 1988 CDS 100% 13.200 9.240 N Sparcl1 n/a
4 TRCN0000080178 CCATGACACTATACATTCATA pLKO.1 2920 3UTR 100% 5.625 3.938 N Sparcl1 n/a
5 TRCN0000080181 CCAACGCGCAAACATCACAAA pLKO.1 1328 CDS 100% 4.950 3.465 N Sparcl1 n/a
6 TRCN0000080182 CCATCCCATTGAACTTCTCTT pLKO.1 2567 CDS 100% 4.950 3.465 N Sparcl1 n/a
7 TRCN0000080180 GCAAATCTATTCCTGCTTGTA pLKO.1 2380 CDS 100% 4.950 3.465 N Sparcl1 n/a
8 TRCN0000143791 GCTTCAGAAATACGAGCAGTT pLKO.1 2901 3UTR 100% 4.050 2.430 N NIBAN1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006534768.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.