Transcript: Mouse XM_006537583.2

PREDICTED: Mus musculus cadherin 17 (Cdh17), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cdh17 (12557)
Length:
3375
CDS:
70..2553

Additional Resources:

NCBI RefSeq record:
XM_006537583.2
NBCI Gene record:
Cdh17 (12557)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006537583.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000094706 CGGGAGAGACAGATGGTATAT pLKO.1 254 CDS 100% 13.200 10.560 N Cdh17 n/a
2 TRCN0000318032 CGGGAGAGACAGATGGTATAT pLKO_005 254 CDS 100% 13.200 10.560 N Cdh17 n/a
3 TRCN0000094704 GCTGTTATCTATCACCAAATT pLKO.1 2923 3UTR 100% 13.200 10.560 N Cdh17 n/a
4 TRCN0000349535 GCTGTTATCTATCACCAAATT pLKO_005 2923 3UTR 100% 13.200 10.560 N Cdh17 n/a
5 TRCN0000094705 GCAGGATATGTCAAGATCAAA pLKO.1 1594 CDS 100% 5.625 4.500 N Cdh17 n/a
6 TRCN0000318034 GCAGGATATGTCAAGATCAAA pLKO_005 1594 CDS 100% 5.625 4.500 N Cdh17 n/a
7 TRCN0000094708 CCAGCGAATATTCCAAGCAAA pLKO.1 1767 CDS 100% 4.950 3.960 N Cdh17 n/a
8 TRCN0000094707 GCTAACAACATCAACAGTATT pLKO.1 1174 CDS 100% 13.200 9.240 N Cdh17 n/a
9 TRCN0000318033 GCTAACAACATCAACAGTATT pLKO_005 1174 CDS 100% 13.200 9.240 N Cdh17 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006537583.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.