Transcript: Mouse XM_006537608.3

PREDICTED: Mus musculus ankyrin repeat domain 6 (Ankrd6), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ankrd6 (140577)
Length:
5128
CDS:
904..3042

Additional Resources:

NCBI RefSeq record:
XM_006537608.3
NBCI Gene record:
Ankrd6 (140577)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006537608.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000420724 TTGTCGCTGTGAACCTCTAAT pLKO_005 2133 CDS 100% 13.200 18.480 N Ankrd6 n/a
2 TRCN0000082092 CGTCAGATGTCTTTGGTAGAT pLKO.1 2380 CDS 100% 4.950 3.960 N Ankrd6 n/a
3 TRCN0000082089 GCAGGATAAAGTGAACGCGAA pLKO.1 2217 CDS 100% 2.160 1.728 N Ankrd6 n/a
4 TRCN0000426315 ACAGGGTTTCCGGCTTGATAA pLKO_005 3067 3UTR 100% 13.200 9.240 N Ankrd6 n/a
5 TRCN0000082088 CCCTGGAGCTAACTCAGTATT pLKO.1 2855 CDS 100% 13.200 9.240 N Ankrd6 n/a
6 TRCN0000425923 TCATGTAAAGAAGGAGTAATT pLKO_005 3522 3UTR 100% 13.200 9.240 N Ankrd6 n/a
7 TRCN0000082091 CTGCCAATAAGGGTCATCTTT pLKO.1 1049 CDS 100% 5.625 3.938 N Ankrd6 n/a
8 TRCN0000082090 GCCCTAAATCACAAGAAGGTA pLKO.1 1549 CDS 100% 3.000 2.100 N Ankrd6 n/a
9 TRCN0000160562 CTAATCAACAAGCTGGAGAAT pLKO.1 2149 CDS 100% 4.950 3.465 N ANKRD6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006537608.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.