Transcript: Mouse XM_006539070.2

PREDICTED: Mus musculus SPEN homolog, transcriptional regulator (Drosophila) (Spen), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Spen (56381)
Length:
12272
CDS:
386..11251

Additional Resources:

NCBI RefSeq record:
XM_006539070.2
NBCI Gene record:
Spen (56381)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006539070.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000226288 AGTGAGAGACGATCCATTAAA pLKO_005 4267 CDS 100% 15.000 21.000 N Spen n/a
2 TRCN0000226286 GACCTCCGCACGGATTATAAT pLKO_005 602 CDS 100% 15.000 21.000 N Spen n/a
3 TRCN0000226287 ATTACGATCAGGATTACTATA pLKO_005 876 CDS 100% 13.200 18.480 N Spen n/a
4 TRCN0000232713 ATTACGATCAGGATTACTATA pLKO_005 876 CDS 100% 13.200 18.480 N SPEN n/a
5 TRCN0000086089 CGTCTCGTAGTAGAGAGGTTT pLKO.1 678 CDS 100% 4.950 6.930 N Spen n/a
6 TRCN0000086091 CCTTGGAAATAACCGCCTCAA pLKO.1 1891 CDS 100% 4.050 3.240 N Spen n/a
7 TRCN0000218154 GAACAGCCTTTGCACTAAATT pLKO_005 11565 3UTR 100% 15.000 10.500 N Spen n/a
8 TRCN0000218526 ACTTTGTACCGTCACTCATTT pLKO_005 12032 3UTR 100% 13.200 9.240 N Spen n/a
9 TRCN0000075165 CCTGTGGTAAAGGTGGTGTTT pLKO.1 2015 CDS 100% 4.950 3.465 N SPEN n/a
10 TRCN0000086090 GCCATTGTTTGTCCCTGCAAA pLKO.1 10618 CDS 100% 4.950 3.465 N Spen n/a
11 TRCN0000086092 GCTAGCTCTTTAGAAAGGAAT pLKO.1 4631 CDS 100% 4.950 3.465 N Spen n/a
12 TRCN0000086088 GCAGAAGATCACGTTGGCAAA pLKO.1 8206 CDS 100% 4.050 2.835 N Spen n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006539070.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.