Transcript: Mouse XM_006539148.3

PREDICTED: Mus musculus small integral membrane protein 1 (Smim1), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Smim1 (68859)
Length:
828
CDS:
553..789

Additional Resources:

NCBI RefSeq record:
XM_006539148.3
NBCI Gene record:
Smim1 (68859)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006539148.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000346870 TACGTGCACAAGTGCAAATAA pLKO_005 769 CDS 100% 15.000 10.500 N Smim1 n/a
2 TRCN0000346872 GGAAGAAGCCTCATGCTATAG pLKO_005 639 CDS 100% 10.800 7.560 N Smim1 n/a
3 TRCN0000346868 GGCCCTCTTCTGGATCATCTT pLKO_005 723 CDS 100% 4.950 3.465 N Smim1 n/a
4 TRCN0000365607 GGCCCTCTTCTGGATCATCTT pLKO_005 723 CDS 100% 4.950 3.465 N SMIM1 n/a
5 TRCN0000346873 TGAAGTCAGCATGACCGCCAT pLKO_005 609 CDS 100% 2.160 1.512 N Smim1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006539148.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.