Transcript: Mouse XM_006540597.1

PREDICTED: Mus musculus D site albumin promoter binding protein (Dbp), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Dbp (13170)
Length:
1392
CDS:
551..1117

Additional Resources:

NCBI RefSeq record:
XM_006540597.1
NBCI Gene record:
Dbp (13170)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006540597.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430894 ATCTCGCCCTGTCAAGCATTC pLKO_005 771 CDS 100% 6.000 8.400 N Dbp n/a
2 TRCN0000086026 GAGGTGCTAATGACCTTTGAA pLKO.1 737 CDS 100% 5.625 7.875 N Dbp n/a
3 TRCN0000086024 CGGAGGTACAAGAACAATGAA pLKO.1 920 CDS 100% 5.625 3.938 N Dbp n/a
4 TRCN0000086027 AGAGGTCGAGAGATGCAAGAA pLKO.1 948 CDS 100% 4.950 3.465 N Dbp n/a
5 TRCN0000418533 ATCATGAAGAAGGCAAGGAAA pLKO_005 857 CDS 100% 4.950 3.465 N Dbp n/a
6 TRCN0000086025 CCGGAGGTACAAGAACAATGA pLKO.1 919 CDS 100% 4.950 3.465 N Dbp n/a
7 TRCN0000086023 GCTCAGACTTACACCTGACTT pLKO.1 1156 3UTR 100% 4.950 3.465 N Dbp n/a
8 TRCN0000244302 CAATCATGAAGAAGGCAAGAA pLKO_005 855 CDS 100% 4.950 3.465 N DBP n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006540597.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.