Transcript: Mouse XM_006540738.2

PREDICTED: Mus musculus Fanconi anemia, complementation group I (Fanci), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Fanci (208836)
Length:
4643
CDS:
100..4089

Additional Resources:

NCBI RefSeq record:
XM_006540738.2
NBCI Gene record:
Fanci (208836)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006540738.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000277509 ATGTAAGCTGGGAGCTAATAT pLKO_005 1353 CDS 100% 15.000 21.000 N Fanci n/a
2 TRCN0000181275 CCGTTATTCTGCACATCGTAT pLKO.1 908 CDS 100% 4.950 6.930 N Fanci n/a
3 TRCN0000277583 CCGTTATTCTGCACATCGTAT pLKO_005 908 CDS 100% 4.950 6.930 N Fanci n/a
4 TRCN0000277585 ACCTGTAAGACGGTGGAAATT pLKO_005 4414 3UTR 100% 13.200 9.240 N Fanci n/a
5 TRCN0000198418 GCATCAGAGATCATAGGATTA pLKO.1 355 CDS 100% 10.800 7.560 N Fanci n/a
6 TRCN0000177566 CAGAGATCATAGGATTACTAA pLKO.1 359 CDS 100% 5.625 3.938 N Fanci n/a
7 TRCN0000277582 CAGAGATCATAGGATTACTAA pLKO_005 359 CDS 100% 5.625 3.938 N Fanci n/a
8 TRCN0000200169 CTTCAGAACCAAGCGGTGAAA pLKO.1 196 CDS 100% 4.950 3.465 N Fanci n/a
9 TRCN0000277511 CTTCAGAACCAAGCGGTGAAA pLKO_005 196 CDS 100% 4.950 3.465 N Fanci n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006540738.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.