Transcript: Mouse XM_006540816.1

PREDICTED: Mus musculus sialic acid binding Ig-like lectin F (Siglecf), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Siglecf (233186)
Length:
2542
CDS:
135..1841

Additional Resources:

NCBI RefSeq record:
XM_006540816.1
NBCI Gene record:
Siglecf (233186)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006540816.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000094305 CCTCCACCATAAATAGTGCAA pLKO.1 1588 CDS 100% 2.640 2.112 N Siglecf n/a
2 TRCN0000094307 GCTTGGAGTGACAATAGAGTT pLKO.1 1350 CDS 100% 4.950 3.465 N Siglecf n/a
3 TRCN0000094304 GCCCTCTAAACCAAAGGCTAT pLKO.1 1935 3UTR 100% 4.050 2.835 N Siglecf n/a
4 TRCN0000094306 CACCATAAATAGTGCAAGCAT pLKO.1 1592 CDS 100% 3.000 2.100 N Siglecf n/a
5 TRCN0000094308 GCCTCAGAACACGGAGGCTAT pLKO.1 1781 CDS 100% 0.135 0.095 N Siglecf n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006540816.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.