Transcript: Human XM_006715415.2

PREDICTED: Homo sapiens spectrin repeat containing nuclear envelope protein 1 (SYNE1), transcript variant X16, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SYNE1 (23345)
Length:
27662
CDS:
484..26913

Additional Resources:

NCBI RefSeq record:
XM_006715415.2
NBCI Gene record:
SYNE1 (23345)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006715415.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000147281 GCGTAGTGATAAGACTGATTT pLKO.1 21474 CDS 100% 13.200 18.480 N SYNE1 n/a
2 TRCN0000431083 CAGAAGTGCTGGTAGCATAAG pLKO_005 26933 3UTR 100% 10.800 15.120 N SYNE1 n/a
3 TRCN0000179586 GCGTGTGGAAAGATACCATAA pLKO.1 25122 CDS 100% 10.800 15.120 N SYNE1 n/a
4 TRCN0000415314 GGCCAAACCTGGGCAAATTTA pLKO_005 21841 CDS 100% 15.000 12.000 N SYNE1 n/a
5 TRCN0000425359 GCGTTCTTGGGAAACCTTAAA pLKO_005 18327 CDS 100% 13.200 10.560 N SYNE1 n/a
6 TRCN0000179554 GCAATCCCAAACTACCAACAA pLKO.1 26970 3UTR 100% 4.950 3.960 N SYNE1 n/a
7 TRCN0000433794 AGCCGTGCAGCAGCTTGATAA pLKO_005 24174 CDS 100% 13.200 9.240 N SYNE1 n/a
8 TRCN0000426368 CAATCAGGCAGCATCACATTT pLKO_005 17070 CDS 100% 13.200 9.240 N SYNE1 n/a
9 TRCN0000430684 GAACCAGTCCGTGCTACAAAT pLKO_005 21429 CDS 100% 13.200 9.240 N SYNE1 n/a
10 TRCN0000426937 GGCGAATGCAGTAGCAGTATA pLKO_005 25651 CDS 100% 13.200 9.240 N SYNE1 n/a
11 TRCN0000147425 GCAGTTTAACTCAGACTTGAA pLKO.1 25848 CDS 100% 4.950 3.465 N SYNE1 n/a
12 TRCN0000148191 GCTGTGGTACAATATGAACAA pLKO.1 17710 CDS 100% 4.950 3.465 N SYNE1 n/a
13 TRCN0000115033 GATTCCCTGGAGAAACTACAT pLKO.1 23569 CDS 100% 4.950 3.465 N Gbp8 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006715415.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.