Transcript: Human XM_006720206.4

PREDICTED: Homo sapiens methyltransferase like 3 (METTL3), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
METTL3 (56339)
Length:
1872
CDS:
862..1752

Additional Resources:

NCBI RefSeq record:
XM_006720206.4
NBCI Gene record:
METTL3 (56339)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006720206.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000034716 CGTCAGTATCTTGGGCAAGTT pLKO.1 1155 CDS 100% 4.950 3.960 N METTL3 n/a
2 TRCN0000289812 CGTCAGTATCTTGGGCAAGTT pLKO_005 1155 CDS 100% 4.950 3.960 N METTL3 n/a
3 TRCN0000034718 GCTGCACTTCAGACGAATTAT pLKO.1 897 CDS 100% 15.000 10.500 N METTL3 n/a
4 TRCN0000289814 GCTGCACTTCAGACGAATTAT pLKO_005 897 CDS 100% 15.000 10.500 N METTL3 n/a
5 TRCN0000034715 GCAAGTATGTTCACTATGAAA pLKO.1 986 CDS 100% 5.625 3.938 N METTL3 n/a
6 TRCN0000289743 GCAAGTATGTTCACTATGAAA pLKO_005 986 CDS 100% 5.625 3.938 N METTL3 n/a
7 TRCN0000039111 CCTCAGTGGATCTGTTGTGAT pLKO.1 1120 CDS 100% 4.950 3.465 N Mettl3 n/a
8 TRCN0000034714 GCCTTAACATTGCCCACTGAT pLKO.1 356 5UTR 100% 4.950 3.465 N METTL3 n/a
9 TRCN0000289813 GCCTTAACATTGCCCACTGAT pLKO_005 356 5UTR 100% 4.950 3.465 N METTL3 n/a
10 TRCN0000039109 CCAGTCATAAACCAGATGAAA pLKO.1 1538 CDS 100% 5.625 3.375 N Mettl3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006720206.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.