Transcript: Human XM_006720371.4

PREDICTED: Homo sapiens DENN domain containing 4A (DENND4A), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DENND4A (10260)
Length:
12461
CDS:
121..5844

Additional Resources:

NCBI RefSeq record:
XM_006720371.4
NBCI Gene record:
DENND4A (10260)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006720371.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000152846 GCATTGATTTACAACGGGCAT pLKO.1 3926 CDS 100% 2.160 3.024 N DENND4A n/a
2 TRCN0000153442 CCCACTCATCACCTTCATTTA pLKO.1 4151 CDS 100% 13.200 9.240 N DENND4A n/a
3 TRCN0000152899 GCCAGTCTGATCTTGGATATA pLKO.1 2957 CDS 100% 13.200 9.240 N DENND4A n/a
4 TRCN0000150539 GAAAGCCACTTTGTTTCTCAT pLKO.1 6022 3UTR 100% 4.950 3.465 N DENND4A n/a
5 TRCN0000151534 CAGATGAACGTATTTCCTGTT pLKO.1 6208 3UTR 100% 4.050 2.835 N DENND4A n/a
6 TRCN0000157182 GCCCTTGTACATTCTCTGGAA pLKO.1 5451 CDS 100% 2.640 1.848 N DENND4A n/a
7 TRCN0000153116 GCCCATGTTCAGAAGAACAAA pLKO.1 2319 CDS 100% 0.563 0.394 N DENND4A n/a
8 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 8077 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006720371.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.