Transcript: Human XM_006723230.3

PREDICTED: Homo sapiens NOVA alternative splicing regulator 2 (NOVA2), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NOVA2 (4858)
Length:
5076
CDS:
428..1579

Additional Resources:

NCBI RefSeq record:
XM_006723230.3
NBCI Gene record:
NOVA2 (4858)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006723230.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000433099 CTTAACACGCTGGCAAGTTAC pLKO_005 947 CDS 100% 10.800 15.120 N NOVA2 n/a
2 TRCN0000438843 AGAGCGGGTATGCCTAGTACA pLKO_005 337 5UTR 100% 4.950 6.930 N NOVA2 n/a
3 TRCN0000074598 CTGGTAGTCATAGGCAGGATT pLKO.1 1727 3UTR 100% 4.950 3.465 N NOVA2 n/a
4 TRCN0000074601 GCACAGCTTTATTGCCGAGAA pLKO.1 385 5UTR 100% 4.050 2.835 N NOVA2 n/a
5 TRCN0000445051 GGTGAAAGCCGTGATGGAACA pLKO_005 556 CDS 100% 4.050 2.835 N NOVA2 n/a
6 TRCN0000074602 CCGAGAAATCCCACAAGCGAT pLKO.1 409 5UTR 100% 2.640 1.848 N NOVA2 n/a
7 TRCN0000074600 CGCTCAATACCTCATCAGTCA pLKO.1 1504 CDS 100% 2.640 1.848 N NOVA2 n/a
8 TRCN0000074599 CCTCAACATCAGCTACGCCAA pLKO.1 727 CDS 100% 2.160 1.512 N NOVA2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006723230.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.