Transcript: Human XM_006724346.2

PREDICTED: Homo sapiens KIAA1671 (KIAA1671), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KIAA1671 (85379)
Length:
10746
CDS:
279..5699

Additional Resources:

NCBI RefSeq record:
XM_006724346.2
NBCI Gene record:
KIAA1671 (85379)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006724346.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000336634 TAGTCTCGGTGCAGGGTATTA pLKO_005 6179 3UTR 100% 13.200 18.480 N KIAA1671 n/a
2 TRCN0000350818 ATGGATCCGGCAGTGCTAAAG pLKO_005 5457 CDS 100% 10.800 15.120 N KIAA1671 n/a
3 TRCN0000336636 ACAACACGTGGATGTTCAAAG pLKO_005 5323 CDS 100% 10.800 7.560 N KIAA1671 n/a
4 TRCN0000336637 CTTCTCCTTCATTGATCAAAC pLKO_005 5162 CDS 100% 10.800 7.560 N KIAA1671 n/a
5 TRCN0000336635 CAAGAAGAGGCAAAGTCTTTA pLKO_005 5663 CDS 100% 13.200 7.920 N KIAA1671 n/a
6 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 9991 3UTR 100% 5.625 2.813 Y KLHL30 n/a
7 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 7496 3UTR 100% 2.640 1.320 Y LINC01098 n/a
8 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 9991 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006724346.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.