Transcript: Mouse XM_011239121.1

PREDICTED: Mus musculus coiled-coil domain containing 187 (Ccdc187), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ccdc187 (329366)
Length:
9890
CDS:
683..7006

Additional Resources:

NCBI RefSeq record:
XM_011239121.1
NBCI Gene record:
Ccdc187 (329366)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011239121.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000266813 TTGTGAAGATCGGGAGGTATT pLKO_005 2017 CDS 100% 10.800 15.120 N Ccdc187 n/a
2 TRCN0000266815 ACAAGACCTGCGCCAACAAAT pLKO_005 1510 CDS 100% 13.200 10.560 N Ccdc187 n/a
3 TRCN0000266811 CCAGGATCCCTGGAGTAATTC pLKO_005 2083 CDS 100% 13.200 9.240 N Ccdc187 n/a
4 TRCN0000266812 CTCTTACCTCAGAACCTTAAT pLKO_005 2839 CDS 100% 13.200 9.240 N Ccdc187 n/a
5 TRCN0000266814 ATGTGGCCTGGTCTGGCAATA pLKO_005 642 5UTR 100% 10.800 7.560 N Ccdc187 n/a
6 TRCN0000054408 ACGCCTTTAATCCCAGCACTT pLKO.1 7876 3UTR 100% 4.050 2.025 Y Mtif2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011239121.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.