Transcript: Mouse XM_011239318.2

PREDICTED: Mus musculus acyl-CoA thioesterase 8 (Acot8), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Acot8 (170789)
Length:
919
CDS:
73..795

Additional Resources:

NCBI RefSeq record:
XM_011239318.2
NBCI Gene record:
Acot8 (170789)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011239318.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000217544 CCCTCATTGACCAGTACTTAA pLKO.1 302 CDS 100% 13.200 18.480 N Acot8 n/a
2 TRCN0000257904 CCCTCATTGACCAGTACTTAA pLKO_005 302 CDS 100% 13.200 18.480 N Acot8 n/a
3 TRCN0000257893 CTAACCTTCACAAGAAGTATC pLKO_005 329 CDS 100% 10.800 8.640 N Acot8 n/a
4 TRCN0000257897 TTGCTGTGTGGCTGCTTATAT pLKO_005 504 CDS 100% 15.000 10.500 N Acot8 n/a
5 TRCN0000216897 GGTGTCAGAGAGTAAGCTATA pLKO.1 774 CDS 100% 10.800 7.560 N Acot8 n/a
6 TRCN0000257911 GGTGTCAGAGAGTAAGCTATA pLKO_005 774 CDS 100% 10.800 7.560 N Acot8 n/a
7 TRCN0000175957 GATCACTCCATGTGGTTTCAT pLKO.1 601 CDS 100% 5.625 3.938 N Acot8 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011239318.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.