Transcript: Mouse XM_011239480.2

PREDICTED: Mus musculus RIKEN cDNA 6820408C15 gene (6820408C15Rik), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
6820408C15Rik (228778)
Length:
2527
CDS:
1260..2324

Additional Resources:

NCBI RefSeq record:
XM_011239480.2
NBCI Gene record:
6820408C15Rik (228778)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011239480.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000191068 CAGAGAGCTTATTGAACAGAT pLKO.1 2138 CDS 100% 4.950 3.465 N 6820408C15Rik n/a
2 TRCN0000191403 CCAACGTAATTCAAGAGAAGA pLKO.1 2008 CDS 100% 4.950 3.465 N 6820408C15Rik n/a
3 TRCN0000202409 GACTTCGAAGAAGGGACCAAA pLKO.1 1477 CDS 100% 4.950 3.465 N 6820408C15Rik n/a
4 TRCN0000190042 GAGAGCAAGACAAACAGCCTT pLKO.1 1782 CDS 100% 2.640 1.848 N 6820408C15Rik n/a
5 TRCN0000202251 GAAGGAGGAGAGCAAGACAAA pLKO.1 1775 CDS 100% 4.950 2.970 N 6820408C15Rik n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011239480.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.