Transcript: Mouse XM_011239693.2

PREDICTED: Mus musculus serine/threonine kinase 39 (Stk39), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Stk39 (53416)
Length:
2174
CDS:
16..1032

Additional Resources:

NCBI RefSeq record:
XM_011239693.2
NBCI Gene record:
Stk39 (53416)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011239693.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000416001 CACTCCCAAATCCCAACAAAT pLKO_005 1115 3UTR 100% 13.200 10.560 N Stk39 n/a
2 TRCN0000025152 GCCCAACCAAACGCTAATGAA pLKO.1 703 CDS 100% 5.625 4.500 N Stk39 n/a
3 TRCN0000413867 CACTCCGAGTTCTGCTTTATT pLKO_005 1219 3UTR 100% 15.000 10.500 N Stk39 n/a
4 TRCN0000025150 CCCTCCAATGAAAGTGCTAAT pLKO.1 225 CDS 100% 10.800 7.560 N Stk39 n/a
5 TRCN0000025153 GTAGTTATAGTGGCTGCTAAT pLKO.1 883 CDS 100% 10.800 7.560 N Stk39 n/a
6 TRCN0000195205 CTTAATGACATACGATTTGAG pLKO.1 787 CDS 100% 4.950 3.465 N STK39 n/a
7 TRCN0000025149 GCCGTTCTGTTAGATTGCTAA pLKO.1 1943 3UTR 100% 4.950 3.465 N Stk39 n/a
8 TRCN0000001005 CCTGATGAAGTGAAGCTGATT pLKO.1 985 CDS 100% 4.950 2.970 N STK39 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011239693.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.