Transcript: Mouse XM_011240261.2

PREDICTED: Mus musculus family with sequence similarity 63, member A (Fam63a), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Mindy1 (75007)
Length:
3114
CDS:
1864..2679

Additional Resources:

NCBI RefSeq record:
XM_011240261.2
NBCI Gene record:
Mindy1 (75007)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011240261.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000173516 GACTTTGAGTATACGCCGGAA pLKO.1 1927 CDS 100% 2.160 3.024 N Mindy1 n/a
2 TRCN0000345863 GACTTTGAGTATACGCCGGAA pLKO_005 1927 CDS 100% 2.160 3.024 N Mindy1 n/a
3 TRCN0000174865 GACACAGAGAATAACCTATAT pLKO.1 2743 3UTR 100% 13.200 9.240 N Mindy1 n/a
4 TRCN0000345864 GACACAGAGAATAACCTATAT pLKO_005 2743 3UTR 100% 13.200 9.240 N Mindy1 n/a
5 TRCN0000215909 CTTAGTGTCTTCTTTCGAAAC pLKO.1 2203 CDS 100% 6.000 4.200 N Mindy1 n/a
6 TRCN0000194084 GAGGGCCTTCAACTTAACTTT pLKO.1 1715 5UTR 100% 5.625 3.938 N Mindy1 n/a
7 TRCN0000215718 CAACAAGAAGAGTATCAACAA pLKO.1 2533 CDS 100% 4.950 3.465 N Mindy1 n/a
8 TRCN0000174963 GAATAACCTATATGCACTGTT pLKO.1 2751 3UTR 100% 4.950 3.465 N Mindy1 n/a
9 TRCN0000345788 GAATAACCTATATGCACTGTT pLKO_005 2751 3UTR 100% 4.950 3.465 N Mindy1 n/a
10 TRCN0000173583 GCATCTTTGACTTGCTGGGAA pLKO.1 1952 CDS 100% 2.640 1.848 N Mindy1 n/a
11 TRCN0000175824 GCTATCTTCTCTTCCTCTCTT pLKO.1 2833 3UTR 100% 4.950 2.970 N Mindy1 n/a
12 TRCN0000345789 GCTATCTTCTCTTCCTCTCTT pLKO_005 2833 3UTR 100% 4.950 2.970 N Mindy1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011240261.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.