Transcript: Mouse XM_011240453.1

PREDICTED: Mus musculus human immunodeficiency virus type I enhancer binding protein 3 (Hivep3), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Hivep3 (16656)
Length:
11586
CDS:
846..7892

Additional Resources:

NCBI RefSeq record:
XM_011240453.1
NBCI Gene record:
Hivep3 (16656)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011240453.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000236165 CAAGAAGGTACGGACTCAAAG pLKO_005 5496 CDS 100% 10.800 15.120 N HIVEP3 n/a
2 TRCN0000096442 CCTCCAATGAGTGTAAAGAAA pLKO.1 5385 CDS 100% 5.625 7.875 N Hivep3 n/a
3 TRCN0000018900 CGCTGGTTGGTGCATAAGTTT pLKO.1 5627 CDS 100% 5.625 7.875 N HIVEP3 n/a
4 TRCN0000096440 CCGAAGCAAATCCTTTGACTA pLKO.1 3815 CDS 100% 4.950 6.930 N Hivep3 n/a
5 TRCN0000226002 TTCAACCCTCTCCGGATATTT pLKO_005 4454 CDS 100% 15.000 12.000 N Hivep3 n/a
6 TRCN0000226003 GGTGAGCAAAGAGACATATAC pLKO_005 5714 CDS 100% 13.200 10.560 N Hivep3 n/a
7 TRCN0000218276 GACACAAGTGATCGAACATAT pLKO_005 2198 CDS 100% 13.200 9.240 N Hivep3 n/a
8 TRCN0000226001 GCAGAAGCCAGGCAAGTATAT pLKO_005 1382 CDS 100% 13.200 9.240 N Hivep3 n/a
9 TRCN0000226004 CAAATCACACACATCCATAAA pLKO_005 8119 3UTR 100% 13.200 7.920 N Hivep3 n/a
10 TRCN0000096443 CCTGCTCTCAAGTAGTTTGTA pLKO.1 1739 CDS 100% 5.625 3.375 N Hivep3 n/a
11 TRCN0000096439 GCAGCAGGAAAGAGAAGAATT pLKO.1 8562 3UTR 100% 0.000 0.000 Y Hivep3 n/a
12 TRCN0000092942 GAAGATGAGGAGGAGGAAGAA pLKO.1 6324 CDS 100% 4.950 2.475 Y Gm13232 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011240453.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.