Transcript: Mouse XM_011240484.3

PREDICTED: Mus musculus cytochrome b5 reductase-like (Cyb5rl), transcript variant X20, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Cyb5rl (230582)
Length:
2723
CDS:
249..1139

Additional Resources:

NCBI RefSeq record:
XM_011240484.3
NBCI Gene record:
Cyb5rl (230582)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011240484.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000099064 CCGGAGAAAGCCGTTTACCTT pLKO.1 1117 CDS 100% 3.000 2.400 N Cyb5rl n/a
2 TRCN0000332073 CCGGAGAAAGCCGTTTACCTT pLKO_005 1117 CDS 100% 3.000 2.400 N Cyb5rl n/a
3 TRCN0000099061 GCAGAAGGATACTTTGACGTT pLKO.1 402 CDS 100% 2.640 2.112 N Cyb5rl n/a
4 TRCN0000332071 GCAGAAGGATACTTTGACGTT pLKO_005 402 CDS 100% 2.640 2.112 N Cyb5rl n/a
5 TRCN0000099063 CTACCGTGACAAGACCCATTT pLKO.1 1051 CDS 100% 10.800 7.560 N Cyb5rl n/a
6 TRCN0000353718 CTACCGTGACAAGACCCATTT pLKO_005 1051 CDS 100% 10.800 7.560 N Cyb5rl n/a
7 TRCN0000099062 GACACCTATCTTGTCCGGTTT pLKO.1 267 CDS 100% 4.050 2.835 N Cyb5rl n/a
8 TRCN0000332072 GACACCTATCTTGTCCGGTTT pLKO_005 267 CDS 100% 4.050 2.835 N Cyb5rl n/a
9 TRCN0000099060 GCAAATGTCATCACCATGGAA pLKO.1 1332 3UTR 100% 3.000 2.100 N Cyb5rl n/a
10 TRCN0000332074 GCAAATGTCATCACCATGGAA pLKO_005 1332 3UTR 100% 3.000 2.100 N Cyb5rl n/a
11 TRCN0000166364 CACACACACACACACACACAA pLKO.1 2334 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011240484.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.