Transcript: Mouse XM_011240977.2

PREDICTED: Mus musculus trinucleotide repeat containing 18 (Tnrc18), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tnrc18 (231861)
Length:
9426
CDS:
571..9426

Additional Resources:

NCBI RefSeq record:
XM_011240977.2
NBCI Gene record:
Tnrc18 (231861)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011240977.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000256219 AGCGGATGTTTGCTATGAAAT pLKO_005 4907 CDS 100% 13.200 18.480 N Tnrc18 n/a
2 TRCN0000256218 TCACGACTCCTCATCTGATTT pLKO_005 5319 CDS 100% 13.200 18.480 N Tnrc18 n/a
3 TRCN0000217930 GCGGATGTTTGCTATGAAATC pLKO.1 4908 CDS 100% 10.800 15.120 N Tnrc18 n/a
4 TRCN0000198608 CGCGTGAACTGAACTCCAATA pLKO.1 4856 CDS 100% 10.800 8.640 N Tnrc18 n/a
5 TRCN0000181383 CAGGCCCTGTTCACAGATATT pLKO.1 3721 CDS 100% 13.200 9.240 N Tnrc18 n/a
6 TRCN0000177960 GCGTGAACTGAACTCCAATAA pLKO.1 4857 CDS 100% 13.200 9.240 N Tnrc18 n/a
7 TRCN0000256222 CAGATAGAACTACCGAGTAAG pLKO_005 4192 CDS 100% 10.800 7.560 N Tnrc18 n/a
8 TRCN0000256221 TGCTGACATCAGACGACTATG pLKO_005 5195 CDS 100% 10.800 7.560 N Tnrc18 n/a
9 TRCN0000178435 GACGAAGACTTCCTGAAGAAT pLKO.1 5728 CDS 100% 5.625 3.938 N Tnrc18 n/a
10 TRCN0000181872 GAAATACATGGCCGGTCTCAA pLKO.1 720 CDS 100% 4.950 3.465 N Tnrc18 n/a
11 TRCN0000181586 GCACCATGAAACCTGAACCTA pLKO.1 2363 CDS 100% 3.000 2.100 N Tnrc18 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011240977.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.