Transcript: Mouse XM_011241096.1

PREDICTED: Mus musculus RIKEN cDNA E330021D16 gene (E330021D16Rik), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
E330021D16Rik (100502936)
Length:
2520
CDS:
1002..2117

Additional Resources:

NCBI RefSeq record:
XM_011241096.1
NBCI Gene record:
E330021D16Rik (100502936)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011241096.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000041155 GCTCAGTGTGTGCTTCAGATA pLKO.1 1594 CDS 100% 4.950 3.465 N LOC243676 n/a
2 TRCN0000041154 CCACCATCAAAGATGGGTCTT pLKO.1 1393 CDS 100% 4.050 2.835 N LOC243676 n/a
3 TRCN0000041153 CCAGTAGAAGTGTCAGCCTTT pLKO.1 2209 3UTR 100% 4.050 2.835 N LOC243676 n/a
4 TRCN0000041157 CCTAGCATCCATCTTCCACAA pLKO.1 1034 CDS 100% 4.050 2.835 N LOC243676 n/a
5 TRCN0000041156 GCATGAGAAATCAGGCTGGTT pLKO.1 2072 CDS 100% 2.640 1.848 N LOC243676 n/a
6 TRCN0000007754 GCCACCTTAGTCAAAGGCAAA pLKO.1 1974 CDS 100% 4.050 2.025 Y UBE2Q2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011241096.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.