Transcript: Mouse XM_011241593.1

PREDICTED: Mus musculus cancer susceptibility candidate 1 (Casc1), transcript variant X8, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Casc1 (320662)
Length:
2327
CDS:
87..2150

Additional Resources:

NCBI RefSeq record:
XM_011241593.1
NBCI Gene record:
Casc1 (320662)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011241593.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000248286 ACCTTCAGTATGGATACTTTG pLKO_005 1443 CDS 100% 10.800 15.120 N Casc1 n/a
2 TRCN0000184228 GTTCATCGACTCAGTGTGCTA pLKO.1 2093 CDS 100% 2.640 3.696 N Casc1 n/a
3 TRCN0000248289 CTGCAGCATCAAGGGTCAATT pLKO_005 588 CDS 100% 13.200 9.240 N Casc1 n/a
4 TRCN0000248290 GAGAAACAGAAGCGGGAAATT pLKO_005 348 CDS 100% 13.200 9.240 N Casc1 n/a
5 TRCN0000248288 TTACTGGAAACTCCGACATAT pLKO_005 546 CDS 100% 13.200 9.240 N Casc1 n/a
6 TRCN0000248287 GTTGAAGGCCTATCGGCAAAT pLKO_005 1778 CDS 100% 10.800 7.560 N Casc1 n/a
7 TRCN0000184121 CCTGTGACCTTGATTCAGGAT pLKO.1 1467 CDS 100% 2.640 1.848 N Casc1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011241593.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.