Transcript: Mouse XM_011241911.1

PREDICTED: Mus musculus transmembrane protein 135 (Tmem135), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tmem135 (72759)
Length:
3219
CDS:
89..1408

Additional Resources:

NCBI RefSeq record:
XM_011241911.1
NBCI Gene record:
Tmem135 (72759)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011241911.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000279140 CCGAGAGCAATGAGCATAATC pLKO_005 680 CDS 100% 13.200 18.480 N Tmem135 n/a
2 TRCN0000174425 CTATTCCATCTCTACAGCAAT pLKO.1 1174 CDS 100% 4.950 6.930 N Tmem135 n/a
3 TRCN0000279202 CTATTCCATCTCTACAGCAAT pLKO_005 1174 CDS 100% 4.950 6.930 N Tmem135 n/a
4 TRCN0000193531 GCCATTCTTATTTCAGGGATA pLKO.1 1921 3UTR 100% 4.050 3.240 N Tmem135 n/a
5 TRCN0000279204 TAGAAAGGCGTTGCTTAATAA pLKO_005 1562 3UTR 100% 15.000 10.500 N Tmem135 n/a
6 TRCN0000217161 CAGGTGCAAAGATGGCTTAAA pLKO.1 538 CDS 100% 13.200 9.240 N Tmem135 n/a
7 TRCN0000174489 CAAGCAGATACGATCATCTAT pLKO.1 1157 CDS 100% 5.625 3.938 N Tmem135 n/a
8 TRCN0000279203 CAAGCAGATACGATCATCTAT pLKO_005 1157 CDS 100% 5.625 3.938 N Tmem135 n/a
9 TRCN0000174342 CCACAGAAACACTATTTAGAA pLKO.1 429 CDS 100% 5.625 3.938 N Tmem135 n/a
10 TRCN0000193771 CCACTTGAGTTTGCTCAGAAT pLKO.1 2830 3UTR 100% 4.950 3.465 N Tmem135 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011241911.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.