Transcript: Mouse XM_011242123.1

PREDICTED: Mus musculus fibroblast growth factor receptor 1 (Fgfr1), transcript variant X7, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Fgfr1 (14182)
Length:
2666
CDS:
777..2156

Additional Resources:

NCBI RefSeq record:
XM_011242123.1
NBCI Gene record:
Fgfr1 (14182)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011242123.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000312574 TGCCACCTGGAGCATCATAAT pLKO_005 1400 CDS 100% 13.200 9.240 N FGFR1 n/a
2 TRCN0000321968 TTAAGCCTGACCACCGAATTG pLKO_005 1360 CDS 100% 10.800 7.560 N Fgfr1 n/a
3 TRCN0000023297 CGCTGCCAAGACGGTGAAGTT pLKO.1 1277 CDS 100% 1.650 1.155 N Fgfr1 n/a
4 TRCN0000427411 CCACCTACTTCTCCGTCAATG pLKO_005 1108 CDS 100% 10.800 6.480 N Fgfr1 n/a
5 TRCN0000023295 CCTGGAGCATCATAATGGATT pLKO.1 1405 CDS 100% 4.950 2.970 N Fgfr1 n/a
6 TRCN0000321966 CCTGGAGCATCATAATGGATT pLKO_005 1405 CDS 100% 4.950 2.970 N Fgfr1 n/a
7 TRCN0000129405 GATGATGACGACGACGATGAT pLKO.1 1155 CDS 100% 4.950 2.475 Y C1orf174 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011242123.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.