Transcript: Mouse XM_011244300.2

PREDICTED: Mus musculus serine (or cysteine) peptidase inhibitor, clade B, member 6a (Serpinb6a), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Serpinb6a (20719)
Length:
1503
CDS:
253..1389

Additional Resources:

NCBI RefSeq record:
XM_011244300.2
NBCI Gene record:
Serpinb6a (20719)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011244300.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000313471 ACGGTGAGGTGCATGAGATTC pLKO_005 1273 CDS 100% 10.800 15.120 N Serpinb6a n/a
2 TRCN0000313470 GGAAGTAACTTACGAGAAATT pLKO_005 996 CDS 100% 13.200 9.240 N Serpinb6a n/a
3 TRCN0000080474 TGACCTATATTGGAGAGATAT pLKO.1 881 CDS 100% 13.200 9.240 N Serpinb6a n/a
4 TRCN0000317083 TGACCTATATTGGAGAGATAT pLKO_005 881 CDS 100% 13.200 9.240 N Serpinb6a n/a
5 TRCN0000080473 CCATGTTAAGACCAATGGAAT pLKO.1 1338 CDS 100% 4.950 3.465 N Serpinb6a n/a
6 TRCN0000317084 CCATGTTAAGACCAATGGAAT pLKO_005 1338 CDS 100% 4.950 3.465 N Serpinb6a n/a
7 TRCN0000092279 GCACACAGTACTTGCTCAGAA pLKO.1 506 CDS 100% 4.950 3.465 N LOC436036 n/a
8 TRCN0000080476 GAGAATTACAACATGAACGAT pLKO.1 1090 CDS 100% 3.000 2.100 N Serpinb6a n/a
9 TRCN0000080475 CCAGGTACAGTGAATTCTGAT pLKO.1 712 CDS 100% 0.000 0.000 N Serpinb6a n/a
10 TRCN0000317082 CCAGGTACAGTGAATTCTGAT pLKO_005 712 CDS 100% 0.000 0.000 N Serpinb6a n/a
11 TRCN0000296533 CCTGTGCAAATGATGTTTAAG pLKO_005 844 CDS 100% 13.200 7.920 N SERPINB6 n/a
12 TRCN0000080477 AGCAGTTTAACAAAGAGCATA pLKO.1 782 CDS 100% 4.950 2.970 N Serpinb6a n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011244300.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.