Transcript: Mouse XM_011244496.2

PREDICTED: Mus musculus nuclear receptor-binding SET-domain protein 1 (Nsd1), transcript variant X14, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Nsd1 (18193)
Length:
12314
CDS:
797..7717

Additional Resources:

NCBI RefSeq record:
XM_011244496.2
NBCI Gene record:
Nsd1 (18193)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011244496.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000418445 GCCCAAGTTTCGTAGTATAAA pLKO_005 1990 CDS 100% 15.000 21.000 N Nsd1 n/a
2 TRCN0000413536 GAGCTCTCGTACAGATCATTA pLKO_005 2234 CDS 100% 13.200 10.560 N Nsd1 n/a
3 TRCN0000441097 GTTGGTCTTGCCGAGCAATAT pLKO_005 917 CDS 100% 13.200 9.240 N Nsd1 n/a
4 TRCN0000123380 GCAGCAAGATTTGAAGAGTTA pLKO.1 5168 CDS 100% 4.950 3.465 N Nsd1 n/a
5 TRCN0000123382 GCTAACAGATTTAGGGAGAAA pLKO.1 3164 CDS 100% 4.950 3.465 N Nsd1 n/a
6 TRCN0000123381 GCTCGTTAAGACACCAGGAAA pLKO.1 3820 CDS 100% 4.950 3.465 N Nsd1 n/a
7 TRCN0000123383 CCAGATTTCTTTCTCCGCCTT pLKO.1 7251 CDS 100% 2.160 1.512 N Nsd1 n/a
8 TRCN0000123379 CCACTGTTCTTCTTTCCTTAT pLKO.1 7822 3UTR 100% 10.800 6.480 N Nsd1 n/a
9 TRCN0000182716 CCTGAGTTCAATTCCCAGCAA pLKO.1 431 5UTR 100% 2.640 1.320 Y BC028528 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011244496.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.