Transcript: Mouse XM_011244773.2

PREDICTED: Mus musculus RIKEN cDNA 4930452B06 gene (4930452B06Rik), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
4930452B06Rik (74430)
Length:
1929
CDS:
16..1494

Additional Resources:

NCBI RefSeq record:
XM_011244773.2
NBCI Gene record:
4930452B06Rik (74430)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011244773.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000178503 CAAATACTACGAGTTGGTCTA pLKO.1 1473 CDS 100% 4.050 5.670 N 4930452B06Rik n/a
2 TRCN0000176540 CCGCCAAACTGAAATTAAATT pLKO.1 105 CDS 100% 15.000 12.000 N 4930452B06Rik n/a
3 TRCN0000198811 CCAGTCCTCTAAGTCTCATTT pLKO.1 1723 3UTR 100% 13.200 9.240 N 4930452B06Rik n/a
4 TRCN0000181774 GCCGTCACTATCAGAAAGAAA pLKO.1 1238 CDS 100% 5.625 3.938 N 4930452B06Rik n/a
5 TRCN0000182055 CCATTTACTCTGGACACACAA pLKO.1 928 CDS 100% 4.950 3.465 N 4930452B06Rik n/a
6 TRCN0000178583 CCTCTAAGTCTCATTTCGTAT pLKO.1 1728 3UTR 100% 4.950 3.465 N 4930452B06Rik n/a
7 TRCN0000198556 GAACAACCAGATGAGTGGATA pLKO.1 679 CDS 100% 4.950 3.465 N 4930452B06Rik n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011244773.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.