Transcript: Mouse XM_011245683.2

PREDICTED: Mus musculus zinc finger and AT hook domain containing (Zfat), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Zfat (380993)
Length:
5947
CDS:
1662..5339

Additional Resources:

NCBI RefSeq record:
XM_011245683.2
NBCI Gene record:
Zfat (380993)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011245683.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000086359 CCGATTGATAAAGTCACATAT pLKO.1 4136 CDS 100% 13.200 18.480 N Zfat n/a
2 TRCN0000086360 GCCTAAGGGTTCCACAAAGAA pLKO.1 1853 CDS 100% 5.625 7.875 N Zfat n/a
3 TRCN0000416659 ACTACTCGACTCCAGATAAAT pLKO_005 4027 CDS 100% 15.000 10.500 N Zfat n/a
4 TRCN0000428148 AGCCATGAAGTGTCCATATTG pLKO_005 4244 CDS 100% 13.200 9.240 N Zfat n/a
5 TRCN0000417622 TCCAGCTCAAAGGGCTAATTG pLKO_005 4216 CDS 100% 13.200 9.240 N Zfat n/a
6 TRCN0000086361 GCTCCCAGTGTCACTATTCTT pLKO.1 3925 CDS 100% 5.625 3.938 N Zfat n/a
7 TRCN0000086358 GCCCAGATAGAGTTCTCTGTA pLKO.1 5426 3UTR 100% 4.950 3.465 N Zfat n/a
8 TRCN0000086362 CGCAAGTTCAAGAATGAGCTA pLKO.1 2856 CDS 100% 2.640 1.848 N Zfat n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011245683.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.