Transcript: Mouse XM_011246534.2

PREDICTED: Mus musculus A kinase (PRKA) anchor protein 8-like (Akap8l), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Akap8l (54194)
Length:
1926
CDS:
119..1858

Additional Resources:

NCBI RefSeq record:
XM_011246534.2
NBCI Gene record:
Akap8l (54194)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011246534.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000088484 CCAGAACATCATACCCGAGTA pLKO.1 604 CDS 100% 4.050 5.670 N Akap8l n/a
2 TRCN0000288033 CCAGAACATCATACCCGAGTA pLKO_005 604 CDS 100% 4.050 5.670 N Akap8l n/a
3 TRCN0000038000 CCTGTGATTATGGATATGGAA pLKO.1 195 CDS 100% 3.000 4.200 N AKAP8L n/a
4 TRCN0000088483 CCCACCTGTGATTATGGATAT pLKO.1 191 CDS 100% 10.800 8.640 N Akap8l n/a
5 TRCN0000088487 CCGAAACCACTTTGCAGTCTA pLKO.1 147 CDS 100% 4.950 3.960 N Akap8l n/a
6 TRCN0000288106 CCGAAACCACTTTGCAGTCTA pLKO_005 147 CDS 100% 4.950 3.960 N Akap8l n/a
7 TRCN0000038002 CCGCAGTATTCTCAACAACAA pLKO.1 1510 CDS 100% 4.950 3.960 N AKAP8L n/a
8 TRCN0000088486 CGAGAACTATGGTTATGGCTA pLKO.1 244 CDS 100% 2.640 2.112 N Akap8l n/a
9 TRCN0000088485 CCACAAGGAACACTTCAAATA pLKO.1 1168 CDS 100% 13.200 9.240 N Akap8l n/a
10 TRCN0000288034 CCACAAGGAACACTTCAAATA pLKO_005 1168 CDS 100% 13.200 9.240 N Akap8l n/a
11 TRCN0000234542 TTGGAACTCTGGGACAAATAG pLKO_005 217 CDS 100% 13.200 9.240 N AKAP8L n/a
12 TRCN0000307539 ACCGGTCAAGCTATGACTATG pLKO_005 354 CDS 100% 10.800 7.560 N Akap8l n/a
13 TRCN0000234543 AGGATAACACCACCAACTATG pLKO_005 276 CDS 100% 10.800 7.560 N AKAP8L n/a
14 TRCN0000307538 GATATCTGAAGGGCGAGAATC pLKO_005 1554 CDS 100% 10.800 7.560 N Akap8l n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011246534.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.