Transcript: Mouse XM_011249432.1

PREDICTED: Mus musculus 1-acylglycerol-3-phosphate O-acyltransferase 9 (Agpat9), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gpat3 (231510)
Length:
2828
CDS:
238..1554

Additional Resources:

NCBI RefSeq record:
XM_011249432.1
NBCI Gene record:
Gpat3 (231510)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011249432.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000099287 GCTTGCTGATTATAGGAACTA pLKO.1 743 CDS 100% 4.950 6.930 N Gpat3 n/a
2 TRCN0000099288 CTTCGGATTATCCCTGGGTAT pLKO.1 318 CDS 100% 4.050 5.670 N Gpat3 n/a
3 TRCN0000099286 CCTCTCCCATTGATGTCCTAA pLKO.1 926 CDS 100% 4.950 3.465 N Gpat3 n/a
4 TRCN0000099289 GAAGAATTACAGCAAGATGAT pLKO.1 1497 CDS 100% 4.950 3.465 N Gpat3 n/a
5 TRCN0000099285 GCAGTGGAGAAAGCACTGTTA pLKO.1 2365 3UTR 100% 0.495 0.347 N Gpat3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011249432.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.