Transcript: Mouse XM_011249773.1

PREDICTED: Mus musculus family with sequence similarity 185, member A (Fam185a), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Fam185a (330050)
Length:
2025
CDS:
308..1180

Additional Resources:

NCBI RefSeq record:
XM_011249773.1
NBCI Gene record:
Fam185a (330050)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011249773.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000183325 CCGTCAAATTTGATTTGAGTA pLKO.1 705 CDS 100% 0.495 0.693 N Fam185a n/a
2 TRCN0000452374 GTTCATGGAAATATCATCTTA pLKO_005 1052 CDS 100% 5.625 3.938 N Fam185a n/a
3 TRCN0000159862 GCCAAGTATCTTTATACAGAA pLKO.1 986 CDS 100% 4.950 3.465 N FAM185A n/a
4 TRCN0000183396 GAATATTGAATGTGATAGCTG pLKO.1 760 CDS 100% 2.640 1.848 N Fam185a n/a
5 TRCN0000184436 GCGATGTGATCTGTTGTGGAA pLKO.1 858 CDS 100% 2.640 1.848 N Fam185a n/a
6 TRCN0000196010 CAAGTATGATGCTGATCGGCA pLKO.1 625 CDS 100% 0.660 0.462 N Fam185a n/a
7 TRCN0000446216 GCTTCAAGCCAAGTATCTTTA pLKO_005 979 CDS 100% 13.200 7.920 N Fam185a n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011249773.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.