Transcript: Mouse XM_011250008.2

PREDICTED: Mus musculus RIKEN cDNA E130308A19 gene (E130308A19Rik), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
E130308A19Rik (230259)
Length:
7663
CDS:
786..3053

Additional Resources:

NCBI RefSeq record:
XM_011250008.2
NBCI Gene record:
E130308A19Rik (230259)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011250008.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000182603 GTCCCAAGAGAGGGTTTGTTT pLKO.1 986 CDS 100% 5.625 7.875 N E130308A19Rik n/a
2 TRCN0000129319 CCTCAAAGCATTGCTCGCAAA pLKO.1 1284 CDS 100% 4.050 3.240 N KIAA1958 n/a
3 TRCN0000200289 GAAGCTGTCGAGGAGTATGAA pLKO.1 1182 CDS 100% 5.625 3.938 N E130308A19Rik n/a
4 TRCN0000177096 CAAACCTGAAACACTTGCTTT pLKO.1 874 CDS 100% 4.950 3.465 N E130308A19Rik n/a
5 TRCN0000127558 CCTCCTCTACAAGTACATGTA pLKO.1 2795 CDS 100% 4.950 3.465 N KIAA1958 n/a
6 TRCN0000182808 GCTGTCGAGGAGTATGAAGAT pLKO.1 1185 CDS 100% 4.950 3.465 N E130308A19Rik n/a
7 TRCN0000130579 CCTGAAACACTTGCTTTCTGA pLKO.1 878 CDS 100% 3.000 2.100 N KIAA1958 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011250008.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.