Transcript: Mouse XM_011250326.2

PREDICTED: Mus musculus UBX domain protein 11 (Ubxn11), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ubxn11 (67586)
Length:
4118
CDS:
2856..4091

Additional Resources:

NCBI RefSeq record:
XM_011250326.2
NBCI Gene record:
Ubxn11 (67586)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011250326.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000415868 AGCGGTTTCTCAGCGACTATG pLKO_005 3061 CDS 100% 10.800 15.120 N Ubxn11 n/a
2 TRCN0000030074 CCCAAGTGTATAATCCGACAA pLKO.1 3639 CDS 100% 4.050 5.670 N Ubxn11 n/a
3 TRCN0000030077 CGGAATGGCATTATGATGTTT pLKO.1 3342 CDS 100% 5.625 4.500 N Ubxn11 n/a
4 TRCN0000421736 ACGGTCTACCAGGACGATACA pLKO_005 3966 CDS 100% 4.950 3.960 N Ubxn11 n/a
5 TRCN0000030075 CCAGGATGACTGCTGAACAAT pLKO.1 3604 CDS 100% 5.625 3.938 N Ubxn11 n/a
6 TRCN0000030078 CCAAGACTCAGAAGAGAAGAT pLKO.1 3 5UTR 100% 4.950 2.970 N Ubxn11 n/a
7 TRCN0000045569 CCTGTCCTCTAGAGGAAGAAT pLKO.1 480 5UTR 100% 5.625 3.375 N ACCS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011250326.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.