Transcript: Human XM_011511102.2

PREDICTED: Homo sapiens NCK associated protein 5 (NCKAP5), transcript variant X10, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NCKAP5 (344148)
Length:
11571
CDS:
4549..10335

Additional Resources:

NCBI RefSeq record:
XM_011511102.2
NBCI Gene record:
NCKAP5 (344148)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011511102.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000122808 GAGAGACACTTACGTCTTCAA pLKO.1 4711 CDS 100% 4.950 6.930 N NCKAP5 n/a
2 TRCN0000143397 GATCTTCACATGGTGGTTGAT pLKO.1 4948 CDS 100% 4.950 6.930 N NCKAP5 n/a
3 TRCN0000121535 CGAAATCTATTGCAGAGTCAA pLKO.1 4831 CDS 100% 4.950 3.960 N NCKAP5 n/a
4 TRCN0000141763 GATGAGGATTCGAGGAGTGAA pLKO.1 4966 CDS 100% 4.950 3.465 N NCKAP5 n/a
5 TRCN0000144698 GATGGAAGAAACAGTACGAAA pLKO.1 4815 CDS 100% 4.950 3.465 N NCKAP5 n/a
6 TRCN0000141297 CAGCAGTACAGATGAGGGAAA pLKO.1 4989 CDS 100% 4.050 2.835 N NCKAP5 n/a
7 TRCN0000142493 GAGGAGAGACACTTACGTCTT pLKO.1 4708 CDS 100% 4.050 2.835 N NCKAP5 n/a
8 TRCN0000143595 GAAGATCTTCACATGGTGGTT pLKO.1 4945 CDS 100% 2.640 1.848 N NCKAP5 n/a
9 TRCN0000141554 CGAGAAGTTGCCCAAAGAACA pLKO.1 4645 CDS 100% 4.950 2.970 N NCKAP5 n/a
10 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 45 5UTR 100% 5.625 2.813 Y KLHL30 n/a
11 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 45 5UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011511102.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.