Transcript: Human XM_011511821.2

PREDICTED: Homo sapiens sperm associated antigen 16 (SPAG16), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SPAG16 (79582)
Length:
3012
CDS:
1213..2826

Additional Resources:

NCBI RefSeq record:
XM_011511821.2
NBCI Gene record:
SPAG16 (79582)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011511821.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000151390 GCATCTTATGAACCGACTATA pLKO.1 1591 CDS 100% 13.200 18.480 N SPAG16 n/a
2 TRCN0000152668 GAACCGACTATAAGGGTGTTA pLKO.1 1600 CDS 100% 4.950 6.930 N SPAG16 n/a
3 TRCN0000151744 CACTTTATGGTCACATGCATT pLKO.1 2474 CDS 100% 4.950 3.465 N SPAG16 n/a
4 TRCN0000153321 GCATTCCCTTTAAGGCTTGAA pLKO.1 2852 3UTR 100% 4.950 3.465 N SPAG16 n/a
5 TRCN0000153666 GCGACAAATTGGCTACTTCAA pLKO.1 2147 CDS 100% 4.950 3.465 N SPAG16 n/a
6 TRCN0000150963 GCTAGAGAAGATTTGCTGAAA pLKO.1 1471 CDS 100% 4.950 3.465 N SPAG16 n/a
7 TRCN0000153935 CCACACTTTACTGAAGGAGAA pLKO.1 1632 CDS 100% 4.050 2.835 N SPAG16 n/a
8 TRCN0000152628 GCAACCAAATCCAAACCTGAA pLKO.1 1896 CDS 100% 4.050 2.835 N SPAG16 n/a
9 TRCN0000152480 CCAATACTCTTCTCACAAGCT pLKO.1 2399 CDS 100% 2.640 1.848 N SPAG16 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011511821.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.