Transcript: Human XM_011512086.2

PREDICTED: Homo sapiens ADAM metallopeptidase domain 23 (ADAM23), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ADAM23 (8745)
Length:
6322
CDS:
324..2822

Additional Resources:

NCBI RefSeq record:
XM_011512086.2
NBCI Gene record:
ADAM23 (8745)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011512086.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000052216 CGCGGGTGACATTTCACTATA pLKO.1 1492 CDS 100% 13.200 18.480 N ADAM23 n/a
2 TRCN0000052215 CGACCACATATAATCCAGAAA pLKO.1 1056 CDS 100% 4.950 6.930 N ADAM23 n/a
3 TRCN0000417769 TGAATCCATCACGTGGTATAT pLKO_005 1186 CDS 100% 13.200 10.560 N ADAM23 n/a
4 TRCN0000052217 CCACTCGATTCCAAGGGTAAA pLKO.1 2532 CDS 100% 10.800 8.640 N ADAM23 n/a
5 TRCN0000052214 CGAGTGTGATATTACTGAATA pLKO.1 2018 CDS 100% 13.200 9.240 N ADAM23 n/a
6 TRCN0000052213 GCAGTGTTACTGGAACTATTA pLKO.1 2884 3UTR 100% 13.200 9.240 N ADAM23 n/a
7 TRCN0000428946 CTTACTCTGTACCAATCTTAC pLKO_005 2300 CDS 100% 10.800 7.560 N ADAM23 n/a
8 TRCN0000032660 CCACGGAATGTGGAAATGGAT pLKO.1 1828 CDS 100% 3.000 2.100 N Adam23 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011512086.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.