Transcript: Human XM_011512315.1

PREDICTED: Homo sapiens ATP binding cassette subfamily C member 5 (ABCC5), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ABCC5 (10057)
Length:
4592
CDS:
237..4331

Additional Resources:

NCBI RefSeq record:
XM_011512315.1
NBCI Gene record:
ABCC5 (10057)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011512315.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000308254 ATCACGGCTCACAGCATATTT pLKO_005 1244 CDS 100% 15.000 21.000 N ABCC5 n/a
2 TRCN0000060303 CCCTTGGCATTCCTGGTTATT pLKO.1 2802 CDS 100% 13.200 18.480 N ABCC5 n/a
3 TRCN0000060304 GCTTTGAAAGTAACACCGTTT pLKO.1 1572 CDS 100% 4.050 5.670 N ABCC5 n/a
4 TRCN0000060306 CCCAAGGGAAAGTACCATCAT pLKO.1 465 CDS 100% 4.950 3.960 N ABCC5 n/a
5 TRCN0000308256 CACCGCCAGTTGAGATCAATT pLKO_005 2602 CDS 100% 13.200 9.240 N ABCC5 n/a
6 TRCN0000060307 CCACATCTTCAATAGTGCTAT pLKO.1 2399 CDS 100% 4.950 2.970 N ABCC5 n/a
7 TRCN0000290031 CCACATCTTCAATAGTGCTAT pLKO_005 2399 CDS 100% 4.950 2.970 N ABCC5 n/a
8 TRCN0000111042 CGAAGGGTTGTGTGGATCTTT pLKO.1 738 CDS 100% 5.625 4.500 N Abcc5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011512315.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.