Transcript: Human XM_011514090.3

PREDICTED: Homo sapiens ciliogenesis and planar polarity effector 1 (CPLANE1), transcript variant X16, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CPLANE1 (65250)
Length:
11236
CDS:
431..9868

Additional Resources:

NCBI RefSeq record:
XM_011514090.3
NBCI Gene record:
CPLANE1 (65250)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011514090.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000263909 ATCGTCTGCAGAGTTACATTA pLKO_005 8050 CDS 100% 13.200 18.480 N CPLANE1 n/a
2 TRCN0000263907 ATGCATCATTAGGCATAATTT pLKO_005 10101 3UTR 100% 15.000 10.500 N CPLANE1 n/a
3 TRCN0000263908 CCTGTAGCACAGTGGTATATA pLKO_005 3728 CDS 100% 15.000 10.500 N CPLANE1 n/a
4 TRCN0000263911 TATGTCCAAACCGAGTTATAT pLKO_005 9352 CDS 100% 15.000 10.500 N CPLANE1 n/a
5 TRCN0000263910 AGCTATTCAGTGCAATGATAT pLKO_005 5272 CDS 100% 13.200 9.240 N CPLANE1 n/a
6 TRCN0000167501 GTCTGATGAATGAACTGTTAT pLKO.1 9177 CDS 100% 13.200 9.240 N CPLANE1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011514090.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.