Transcript: Human XM_011514247.3

PREDICTED: Homo sapiens phenylalanyl-tRNA synthetase 2, mitochondrial (FARS2), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
FARS2 (10667)
Length:
3303
CDS:
309..1628

Additional Resources:

NCBI RefSeq record:
XM_011514247.3
NBCI Gene record:
FARS2 (10667)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011514247.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000230543 AGTTCTCGCTCTGCGCATAAA pLKO_005 969 CDS 100% 13.200 18.480 N FARS2 n/a
2 TRCN0000230544 TCCGGCTGTGATCAATGATAT pLKO_005 1388 CDS 100% 13.200 18.480 N FARS2 n/a
3 TRCN0000045734 GCCGTGAAGCTTGTAGAGTTT pLKO.1 1011 CDS 100% 4.950 6.930 N FARS2 n/a
4 TRCN0000230541 ACTCCCAGCACTACCCTATTT pLKO_005 859 CDS 100% 13.200 9.240 N FARS2 n/a
5 TRCN0000230542 GAGTTATTTGCTGGTATAAAG pLKO_005 918 CDS 100% 13.200 9.240 N FARS2 n/a
6 TRCN0000217976 TGGAACAACAACTGGTCAATT pLKO_005 1189 CDS 100% 13.200 9.240 N FARS2 n/a
7 TRCN0000045737 AGGTGAAGTTTCAGCCTCTTA pLKO.1 1360 CDS 100% 4.950 3.465 N FARS2 n/a
8 TRCN0000045733 CCTCTGAGAATTACGCAGAAA pLKO.1 1423 CDS 100% 4.950 3.465 N FARS2 n/a
9 TRCN0000045735 GAGCACTTCTACAAGCAGTAT pLKO.1 591 CDS 100% 4.950 3.465 N FARS2 n/a
10 TRCN0000045736 GCATGAGTTATTTGCTGGTAT pLKO.1 914 CDS 100% 4.950 3.465 N FARS2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011514247.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.