Transcript: Human XM_011517544.2

PREDICTED: Homo sapiens PLAG1 zinc finger (PLAG1), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PLAG1 (5324)
Length:
6799
CDS:
457..1713

Additional Resources:

NCBI RefSeq record:
XM_011517544.2
NBCI Gene record:
PLAG1 (5324)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011517544.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000230948 ATGAGGCAGACTCGCTTATTT pLKO_005 4519 3UTR 100% 15.000 21.000 N PLAG1 n/a
2 TRCN0000230946 CCCTAACAAAGAGACGTTTAA pLKO_005 555 CDS 100% 13.200 18.480 N PLAG1 n/a
3 TRCN0000020546 CGACCCTAACAAAGAGACGTT pLKO.1 552 CDS 100% 2.640 3.696 N PLAG1 n/a
4 TRCN0000218976 CAATACCAAGCTTGGATTTAA pLKO_005 600 CDS 100% 15.000 10.500 N PLAG1 n/a
5 TRCN0000218211 CAATGTGTCTGTGCCTATAAA pLKO_005 978 CDS 100% 15.000 10.500 N PLAG1 n/a
6 TRCN0000020548 CCACCAAATGATCACAACTTT pLKO.1 1122 CDS 100% 5.625 3.938 N PLAG1 n/a
7 TRCN0000020547 CCTTTCTTTCAAATATCCGTT pLKO.1 1197 CDS 100% 2.640 1.848 N PLAG1 n/a
8 TRCN0000230947 GGATCACCTGACTCGACATAT pLKO_005 885 CDS 100% 13.200 7.920 N PLAG1 n/a
9 TRCN0000020545 CCAGCAGTTTAAGCACAAGTA pLKO.1 1658 CDS 100% 4.950 2.970 N PLAG1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011517544.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.