Transcript: Human XM_011517788.2

PREDICTED: Homo sapiens coiled-coil domain containing 171 (CCDC171), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CCDC171 (203238)
Length:
6170
CDS:
428..4432

Additional Resources:

NCBI RefSeq record:
XM_011517788.2
NBCI Gene record:
CCDC171 (203238)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011517788.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000133653 GATTGCCTCATTGGATGTAAA pLKO.1 475 CDS 100% 13.200 18.480 N CCDC171 n/a
2 TRCN0000136803 CGGCGACAAACAAGTGAACTT pLKO.1 1184 CDS 100% 4.950 3.960 N CCDC171 n/a
3 TRCN0000136943 GCAGACCGAGAGGCTTTAATA pLKO.1 2003 CDS 100% 15.000 10.500 N CCDC171 n/a
4 TRCN0000135448 GCCCATGGACTTCATAAAGTA pLKO.1 3281 CDS 100% 5.625 3.938 N CCDC171 n/a
5 TRCN0000134573 GTCAGCTCAATAGACATCTTA pLKO.1 3768 CDS 100% 5.625 3.938 N CCDC171 n/a
6 TRCN0000134404 GCAGAAGCAAATACTTGGATT pLKO.1 3367 CDS 100% 4.950 3.465 N CCDC171 n/a
7 TRCN0000136145 GCAGCCTTGAAATCAGAACTT pLKO.1 4145 CDS 100% 4.950 3.465 N CCDC171 n/a
8 TRCN0000135536 CCTTTCAAAGAGACTCCAGTA pLKO.1 1579 CDS 100% 4.050 2.835 N CCDC171 n/a
9 TRCN0000135289 CGGAAAGGTGTTATTGCTGTT pLKO.1 2855 CDS 100% 4.050 2.835 N CCDC171 n/a
10 TRCN0000134638 GAGAGGCTTTAATAAGCACTT pLKO.1 2010 CDS 100% 4.050 2.835 N CCDC171 n/a
11 TRCN0000135632 GCTAATCACATGAGAGCAGTA pLKO.1 3881 CDS 100% 4.050 2.835 N CCDC171 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011517788.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.