Transcript: Human XM_011523362.3

PREDICTED: Homo sapiens polyamine modulated factor 1 binding protein 1 (PMFBP1), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PMFBP1 (83449)
Length:
3424
CDS:
18..3218

Additional Resources:

NCBI RefSeq record:
XM_011523362.3
NBCI Gene record:
PMFBP1 (83449)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011523362.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000424147 ACCGAGGGAATGATCAGATTA pLKO_005 2662 CDS 100% 13.200 18.480 N PMFBP1 n/a
2 TRCN0000422230 CATTCAAGAACTTCGAAATAA pLKO_005 773 CDS 100% 15.000 12.000 N PMFBP1 n/a
3 TRCN0000414265 TCATTCAAAGGTACGGATATA pLKO_005 665 CDS 100% 13.200 10.560 N PMFBP1 n/a
4 TRCN0000422198 GAACCTCCTTGAGGACGATAA pLKO_005 2588 CDS 100% 10.800 8.640 N PMFBP1 n/a
5 TRCN0000146442 CGCCAATGAGAAACTAGGAAA pLKO.1 2720 CDS 100% 4.950 3.960 N PMFBP1 n/a
6 TRCN0000434912 TAAACCTCTACAGGGATAAAT pLKO_005 541 CDS 100% 15.000 10.500 N PMFBP1 n/a
7 TRCN0000149599 CCTTCAGAAGGAGTCCTTAAT pLKO.1 2117 CDS 100% 13.200 9.240 N PMFBP1 n/a
8 TRCN0000148676 CCTCCAAGAGAAAGATGAGAT pLKO.1 1214 CDS 100% 4.950 3.465 N PMFBP1 n/a
9 TRCN0000179843 CCTTGCATGATTCAAGAGCAT pLKO.1 693 CDS 100% 2.640 1.848 N PMFBP1 n/a
10 TRCN0000149539 GACATCAAGAATCTGCACGAT pLKO.1 81 CDS 100% 2.640 1.848 N PMFBP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011523362.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.