Transcript: Human XM_011523699.2

PREDICTED: Homo sapiens discs large MAGUK scaffold protein 4 (DLG4), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
DLG4 (1742)
Length:
3453
CDS:
242..2635

Additional Resources:

NCBI RefSeq record:
XM_011523699.2
NBCI Gene record:
DLG4 (1742)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011523699.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235628 ACGATCATCGCTCAGTATAAA pLKO_005 1619 CDS 100% 15.000 21.000 N DLG4 n/a
2 TRCN0000235626 CTGGACATCCTGGACTATTAT pLKO_005 356 CDS 100% 15.000 21.000 N DLG4 n/a
3 TRCN0000006111 GCATGAGTGGAAGGTCTAAAT pLKO.1 3224 3UTR 100% 13.200 18.480 N DLG4 n/a
4 TRCN0000235625 TGCATGAGTGGAAGGTCTAAA pLKO_005 3223 3UTR 100% 13.200 18.480 N DLG4 n/a
5 TRCN0000006112 CGTATGATGTTGTCTACCTAA pLKO.1 1164 CDS 100% 4.950 6.930 N DLG4 n/a
6 TRCN0000006114 GCTAGAGATTAACAAGCGGAT pLKO.1 2434 CDS 100% 2.160 3.024 N DLG4 n/a
7 TRCN0000235627 ACGAGAGTGGTCAAGGTTAAA pLKO_005 1948 CDS 100% 13.200 9.240 N DLG4 n/a
8 TRCN0000321881 ACGAGAGTGGTCAAGGTTAAA pLKO_005 1948 CDS 100% 13.200 9.240 N Dlg4 n/a
9 TRCN0000006113 CCTCTCAGAGAGTCAGAAATA pLKO.1 385 CDS 100% 13.200 9.240 N DLG4 n/a
10 TRCN0000235624 TATGATGTTGTCTACCTAAAG pLKO_005 1166 CDS 100% 10.800 7.560 N DLG4 n/a
11 TRCN0000006115 GTCACGATCATCGCTCAGTAT pLKO.1 1616 CDS 100% 4.950 3.465 N DLG4 n/a
12 TRCN0000161389 GCAGATTGGAGACAAGATCAT pLKO.1 1078 CDS 100% 4.950 2.475 Y TAX1BP3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011523699.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.