Transcript: Human XM_011524979.1

PREDICTED: Homo sapiens NPL4 homolog, ubiquitin recognition factor (NPLOC4), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NPLOC4 (55666)
Length:
2107
CDS:
219..2072

Additional Resources:

NCBI RefSeq record:
XM_011524979.1
NBCI Gene record:
NPLOC4 (55666)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011524979.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000338872 CGGAAGGTTGGCTGGATATTT pLKO_005 1134 CDS 100% 15.000 21.000 N NPLOC4 n/a
2 TRCN0000338873 CGTCCGCTACAGTCGAAATAA pLKO_005 1190 CDS 100% 15.000 21.000 N NPLOC4 n/a
3 TRCN0000350998 ATTCGATGAGGACTATCTAAA pLKO_005 656 CDS 100% 13.200 18.480 N NPLOC4 n/a
4 TRCN0000152140 CCTATTTGTCTCAGAATACCT pLKO.1 1687 CDS 100% 3.000 2.400 N NPLOC4 n/a
5 TRCN0000153073 GCTGAAGTGGTCGATGAAATT pLKO.1 1095 CDS 100% 13.200 9.240 N NPLOC4 n/a
6 TRCN0000152941 GACAACCAAGTCCACTTTGAA pLKO.1 1347 CDS 100% 5.625 3.938 N NPLOC4 n/a
7 TRCN0000158228 CCTGACAACCAAGTCCACTTT pLKO.1 1344 CDS 100% 4.950 3.465 N NPLOC4 n/a
8 TRCN0000338871 CCTGACAACCAAGTCCACTTT pLKO_005 1344 CDS 100% 4.950 3.465 N NPLOC4 n/a
9 TRCN0000215673 GAACATCAGCTGCAAGATTAA pLKO.1 770 CDS 100% 13.200 7.920 N Nploc4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011524979.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.