Transcript: Human XM_011525162.2

PREDICTED: Homo sapiens HNF1 homeobox B (HNF1B), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
HNF1B (6928)
Length:
3004
CDS:
176..1318

Additional Resources:

NCBI RefSeq record:
XM_011525162.2
NBCI Gene record:
HNF1B (6928)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011525162.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000017511 CCGACAATTCAACCAGACAGT pLKO.1 715 CDS 100% 2.640 1.848 N HNF1B n/a
2 TRCN0000017510 GCAAATCTTGTACCAGGCCTA pLKO.1 904 CDS 100% 2.160 1.512 N HNF1B n/a
3 TRCN0000017512 CAGTCCAGAGTTCTGGAAATA pLKO.1 732 CDS 100% 1.320 0.924 N HNF1B n/a
4 TRCN0000017509 GCTGTTTCTCTTTCCAGAGTT pLKO.1 781 CDS 100% 4.950 2.970 N HNF1B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011525162.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.