Transcript: Human XM_011525382.1

PREDICTED: Homo sapiens chromobox 2 (CBX2), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CBX2 (84733)
Length:
3990
CDS:
99..1859

Additional Resources:

NCBI RefSeq record:
XM_011525382.1
NBCI Gene record:
CBX2 (84733)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011525382.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000232722 GGCTGGTCCTCCAAACATAAC pLKO_005 201 CDS 100% 10.800 15.120 N CBX2 n/a
2 TRCN0000363307 TCCAAACATAACAGCTGGGAG pLKO_005 210 CDS 100% 2.160 1.728 N CBX2 n/a
3 TRCN0000020325 CGCCGAGTGCATCCTGAGCAA pLKO.1 137 CDS 100% 0.000 0.000 N CBX2 n/a
4 TRCN0000364185 CAGAAGAAGGAACATGAGAAG pLKO_005 273 CDS 100% 4.050 2.835 N CBX2 n/a
5 TRCN0000363281 GAACATGAGAAGGAGGTGCAG pLKO_005 282 CDS 100% 2.160 1.512 N CBX2 n/a
6 TRCN0000020326 GCCTTCCAGAAGAAGGAACAT pLKO.1 267 CDS 100% 0.495 0.347 N CBX2 n/a
7 TRCN0000378282 GCTGGAGTACCTGGTCAAGTG pLKO_005 176 CDS 100% 1.350 0.810 N CBX2 n/a
8 TRCN0000368589 GAGGTGCAGAACCGGAAGAGA pLKO_005 294 CDS 100% 1.000 0.600 N CBX2 n/a
9 TRCN0000020327 GCCAAGGAAGCTCACTGCCAT pLKO.1 335 CDS 100% 0.880 0.528 N CBX2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011525382.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.