Transcript: Human XM_011529922.3

PREDICTED: Homo sapiens chromosome 22 open reading frame 42 (C22orf42), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
C22orf42 (150297)
Length:
1828
CDS:
497..1294

Additional Resources:

NCBI RefSeq record:
XM_011529922.3
NBCI Gene record:
C22orf42 (150297)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011529922.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000417510 AGACTTCATGACATCGGATCT pLKO_005 1075 CDS 100% 4.050 5.670 N C22orf42 n/a
2 TRCN0000165075 GACCACCATTTGGTCGAAGAT pLKO.1 1025 CDS 100% 0.495 0.693 N C22orf42 n/a
3 TRCN0000161236 GAGGAGAATATAACGTCAGAT pLKO.1 980 CDS 100% 4.950 6.435 N C22orf42 n/a
4 TRCN0000420337 GATGGCAAAGGAGAGATATGA pLKO_005 1189 CDS 100% 5.625 3.938 N C22orf42 n/a
5 TRCN0000163196 GCTGAAGATGTCCAAAGGTTT pLKO.1 754 CDS 100% 4.950 3.465 N C22orf42 n/a
6 TRCN0000166023 CAGGTCTCAGTGAAAGCCTAT pLKO.1 1137 CDS 100% 4.050 2.835 N C22orf42 n/a
7 TRCN0000158483 CCAAATTGGATTTGAAAGCTA pLKO.1 684 CDS 100% 3.000 2.100 N C22orf42 n/a
8 TRCN0000166720 CCATGAGTGTGAGATTCCTGA pLKO.1 619 CDS 100% 2.640 1.848 N C22orf42 n/a
9 TRCN0000162988 GAAGACTTCATGACATCGGAT pLKO.1 1073 CDS 100% 2.640 1.848 N C22orf42 n/a
10 TRCN0000438357 GATTACCTCTGCTGGGTTAAG pLKO_005 1211 CDS 100% 10.800 5.400 Y C22orf42 n/a
11 TRCN0000161059 GAGGAGAATATGACATCAGAT pLKO.1 887 CDS 100% 4.950 2.475 Y C22orf42 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011529922.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.