Transcript: Human XM_011531519.3

PREDICTED: Homo sapiens family with sequence similarity 13 member A (FAM13A), transcript variant X10, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
FAM13A (10144)
Length:
5587
CDS:
501..3014

Additional Resources:

NCBI RefSeq record:
XM_011531519.3
NBCI Gene record:
FAM13A (10144)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011531519.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000116131 GCAAGCCTAAACGTCAGAAAT pLKO.1 1333 CDS 100% 13.200 18.480 N FAM13A n/a
2 TRCN0000116129 CCTTTCTATTTGAGTGCTCAT pLKO.1 978 CDS 100% 4.050 3.240 N FAM13A n/a
3 TRCN0000116127 GCCTTTAAGTTTGCTCTTAAT pLKO.1 4638 3UTR 100% 1.320 1.056 N FAM13A n/a
4 TRCN0000339020 GATGACGCTGATGGATTTATT pLKO_005 2691 CDS 100% 15.000 10.500 N FAM13A n/a
5 TRCN0000339019 CCTTTGCTGCAGCCAATTATC pLKO_005 2532 CDS 100% 13.200 9.240 N FAM13A n/a
6 TRCN0000116130 GCAGGTGATGAAGCCACTATA pLKO.1 2426 CDS 100% 13.200 9.240 N FAM13A n/a
7 TRCN0000339017 CTAACACCATACCCATCATTG pLKO_005 2485 CDS 100% 10.800 7.560 N FAM13A n/a
8 TRCN0000338951 TAATAACTCTGGAGGTCAAAG pLKO_005 1085 CDS 100% 10.800 7.560 N FAM13A n/a
9 TRCN0000338953 TCGAAAGAAACTTCGGGATTT pLKO_005 2837 CDS 100% 10.800 7.560 N FAM13A n/a
10 TRCN0000116128 CCCACCAAACTCCCATTCTTT pLKO.1 1856 CDS 100% 5.625 3.938 N FAM13A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011531519.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.