Transcript: Human XM_011532124.2

PREDICTED: Homo sapiens platelet derived growth factor C (PDGFC), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
PDGFC (56034)
Length:
2688
CDS:
205..1209

Additional Resources:

NCBI RefSeq record:
XM_011532124.2
NBCI Gene record:
PDGFC (56034)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011532124.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000118188 CCTCATACTTATCCAAGAAAT pLKO.1 361 CDS 100% 13.200 10.560 N PDGFC n/a
2 TRCN0000331695 CCTCATACTTATCCAAGAAAT pLKO_005 361 CDS 100% 13.200 10.560 N PDGFC n/a
3 TRCN0000118191 CCCAGTGATGGAACTATATTA pLKO.1 511 CDS 100% 15.000 10.500 N PDGFC n/a
4 TRCN0000300954 CCCAGTGATGGAACTATATTA pLKO_005 511 CDS 100% 15.000 10.500 N PDGFC n/a
5 TRCN0000118189 CCTCAGCATGAGAGAATTATT pLKO.1 301 CDS 100% 15.000 10.500 N PDGFC n/a
6 TRCN0000300891 CCTCAGCATGAGAGAATTATT pLKO_005 301 CDS 100% 15.000 10.500 N PDGFC n/a
7 TRCN0000118187 CCATCCTTAATCTCAGTTGTT pLKO.1 1288 3UTR 100% 4.950 3.465 N PDGFC n/a
8 TRCN0000118190 CCAGGTTGTCTCCTGGTTAAA pLKO.1 985 CDS 100% 1.320 0.792 N PDGFC n/a
9 TRCN0000300892 CCAGGTTGTCTCCTGGTTAAA pLKO_005 985 CDS 100% 1.320 0.792 N PDGFC n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011532124.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.